They should take off & do everything except for the animated gear displaying. Not all 3rd party aircraft are suitable for use as AI wingmen or opponents. The best option is to create AI Only Drones for use in missions. My tute might interest you. http://www.simviation.com/lair/AI%20drones.htm
If they don't perform properly in AI you can tweak the AIR file or use one from a similar default aircraft.