Cowl flaps: In my experience....
Fully open = on the ground, climbing, final approach.
Varying degrees of closure/fully closed = cruise flight, descent until lined up on final.
Mixture: you can fiddle with the CHT needles to accomplish a specific temperature goal, or just lean it until the engine roughens/slows then bump it up a tad.
Didn't read through to see if it is mentioned, but it is a good idea to lean the mixture when taxiing/operating on ground at low power settings so you don't allow an excessive carbon buildup to foul the plugs.(Keeping the rpms at at least 1000 also contributes to this practice) Just remember to go full rich for takeoff, keep it full until around 3000 ft (unless your field is at high altitude), and then full rich when landing.