About published missed. If I remember it has to do with flying to a designated vor and climbing to 5000 before waiting getting instructions in the case of a go-around. I tried that last night and sort of answered my question, sorry about that.
When I save flights I pause the game press alt and select flights. then save, when I land I turn of everything and start over. I works fine. But when I make a new flight it still starts me with airspeed hold on 315 and auto throttle engaged. When I view instant replies 30% of the time I can see my jet exploding on touch down then slideing as it taxis off the runway

Thanks again for the help, I havn't witnessed any more problems so far. The sim is doing mutch better.
-Aiden