It's V.2 upgraded to V.3. I went
here and got all three, and installed them in order. Seems to work ok. In fact, V.3 doesn't change the model's .air, aircraft.cfg, or .mdl files, so no animation commands should have changed at all. :-/
Try this, make a backup your FS9.cfg, then delete the original, allowing the sim to make a new one. (This can be a pain in the butt, because it will undo any custom control settings or config tweaks you may have made) Then try it again.
I've had a few instances of my sim dropping some control settings spontaneously out of the blue. If that's what you're dealing with, this should fix it.