Rather than using the air to move your potentiometer (getting a headache just thinking about that), you might rig some other sort of simple linkage that moves when the pedals move. Much easier and cheaper.
JB is on to something brilliant, but I'm guessing you're not looking to go quite that far...

The pump-pedal idea has potential, that's for sure. The movement of your feet will be more similar to braking than moving the rudder, but maybe not very much so.
As for hacking a stick: don't plan on using it again as such, although that's do-able. Rather than go through all the trouble of setting things up so you can restore the joystick to its former state, you'd be better off getting a real cheap joystick and gutting it.
If you're only using it for rudder control, it can be a pretty crappy joystick. ;D